species:   Rhsol
pid:       PID1776
parent:    novel-milR-39
paralog:   
locus:     KB317885.1:585-966
matures:   ['UGAAGGCCUCUGCAUCAAAUGUGG', 'ACUCAUUGACCUCCCCUCAC']
srr:       SRR10747102
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747102.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747102.cram KB317885.1:585-966

1 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

     **************************                                                                                                                                                                                                                                                                                                                                    **********************     
ACAGGGCUGAAGGCCUCUGCAUCAAAUGUGGUAAGGCUGGGCACAAAUUUGCAGAAUGCCGCAUGGGAUGGAAGGCCACUCCCAAGGAAGAUGGCAUCAAAAAGGAAGCCACCAAGAUUGGCAAAGAGUCUGGACCCAAAUUGGGAAAAGACUAAGGGUACCUGCUGCUGUGUGCAAGGACCCCAAGGACUCUGGCACUGUUUUAGAAAUAUGUAAUAUAUCCAUCUCCAAAAAUGCACCCCUAUUCACUAUUUCCAUACAACCAGAGAAGAAAGCAGACCCCUUAGAAGUCCUGAUUGACUCAGGCGCCACAUUGUCAUUCCUACACCCCCACACUGCAGAAGCCCUAUGCCUACCACUCAUUGACCUCCCCUCACCUUGU
((((((.(((.((........((((..((((((.(((.((((.....(((((((.(((((((.((((((((....))).))))).).....)))))).....(((((.....(((...((((.....((((((.....((((((((.....(((((((...(((((((.....)).....((....)).((((((...(((....((((((((.((((....(((........)))......)))))).))))))...))).)))))).....)))))..)))))))...))))))))...))))))))))..)))...)))))...........))))))).))))...)))))))))...)))).....)))))))))))
-------UGAAGGCCUCUGCAUCAAAUGUGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=0 c
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACUCAUUGACCUCCCCUCAC----- l=20 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------AAGACUAAGGGUACCUGCUGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 ma
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACUCAUUGACCUCCCCUCAC----- l=20 a=0 ma*

---------------------------------------------------------------------------------------------------------------------------AAGAGUCUGGACCCgAAUUGGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------AAGACUAAGGGUACCUGCUGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 (ma)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGAGAAGAAAGCAGACCCCU-------------------------------------------------------------------------------------------------- l=22 a=1 

mb-00011
ax-1000011
ku-01
ss-110101101000
fn-111
